This is pass/fail. If you do not get at least 70% your should resubmit the problems you got wrong.
Do not give me raw print-outs or a huge amount of numbers. For example I dont want a list of every homologous protein. Rather tell me how many their are. Do they fall into interesting classes-how many from bacteria or higher animals? Are they from different organs? Are there lots of mutants? If you are lost for how to organize your findings ask each other or ask me in person or by email.
If you want me to look at the output from a particular site or program email me the file or the site address.
The paper should go parallel your homework -
Section 1 - What your protein does (function); Describe it's structure.
Section 2 - The thermodynamics of your protein - Describe the reaction and the forces from the protein (from hydrogen bonds, hydrophobicity etc) that your protein uses to influence the reaction.
Section 3 - Something about your protein that you pick. This can be a disease caused by mutation; a piece of interesting physics or engineering that your protein is using; comparison between differnt proteins.